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Statements

Subject Item
dbr:PyMOL
rdf:type
wikidata:Q386724 dbo:Work owl:Thing schema:CreativeWork dbo:Software wikidata:Q7397
rdfs:label
PyMOL
rdfs:comment
PyMOL is an open source but proprietary molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities. It is currently commercialized by Schrödinger, Inc. As the original software license was a permissive licence, they were able to remove it; new versions are no longer released under the Python license, but under a custom license (granting broad use, redistribution, and modification rights, but assigning copyright to any version to Schrodinger, LLC.), and some of the source code is no longer released. PyMOL can produce high-quality 3D images of small molecules and biological macromole
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dbt:Commons_category dbt:Infobox_software dbt:Periodic_table_(PyMOL_colors) dbt:Chemistry_software dbt:Start_date_and_age dbt:Reflist dbt:More_citations_needed dbt:Use_dmy_dates dbt:Portal dbt:Citation_needed dbt:PDB
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dbc:Software_that_uses_Tk_(software) dbc:Free_chemistry_software dbc:Open-source_software_converted_to_a_proprietary_license dbc:Color_codes dbc:Molecular_modelling_software dbc:Articles_containing_video_clips dbc:Chemistry_software_for_Linux
dbo:latestReleaseDate
2021-08-20
dbo:latestReleaseVersion
2.5.2
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PyMOL
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dbr:Schrödinger,_Inc.
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dbr:Molecular_modelling
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dbr:Python_License
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dbo:abstract
PyMOL is an open source but proprietary molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities. It is currently commercialized by Schrödinger, Inc. As the original software license was a permissive licence, they were able to remove it; new versions are no longer released under the Python license, but under a custom license (granting broad use, redistribution, and modification rights, but assigning copyright to any version to Schrodinger, LLC.), and some of the source code is no longer released. PyMOL can produce high-quality 3D images of small molecules and biological macromolecules, such as proteins. According to the original author, by 2009, almost a quarter of all published images of 3D protein structures in the scientific literature were made using PyMOL. PyMOL is one of the few mostly open-source model visualization tools available for use in structural biology. The Py part of the software's name refers to the program having been written in the programming language Python. PyMOL uses OpenGL Extension Wrangler Library (GLEW) and FreeGLUT, and can solve Poisson–Boltzmann equations using the Adaptive Poisson Boltzmann Solver. PyMOL used Tk for the GUI widgets and had native Aqua binaries for macOS through Schrödinger, which were replaced with a PyQt user interface on all platforms with the release of version 2.0.
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